exRNAdisease

Entry Detail

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General Information

Database ID: exR0385048 RNA Name: RAB1B RNA Type: mRNA Chromosome: chr11 Starnd: + Coordinate: Start Site(bp): 66268590 End Site(bp): 66277492 External Links: ENSG00000174903

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABHD16A chr6 31686955 31703356 - ABTB2 chr11 34150987 34358010 - AC010422.3 chr19 12643831 12648397 - AC020909.1 chr19 50415799 50428409 + ACAT2 chr6 159762045 159779112 + ACTN4 chr19 38647649 38731589 + ACTR5 chr20 38748460 38772520 + ADAM19 chr5 157395534 157575775 - AICDA chr12 8602170 8612867 - AK2 chr1 33007940 33080996 - AKR1A1 chr1 45550543 45570049 + AL121594.1 chr14 35122549 35317474 + AL136295.5 chr14 24147548 24166452 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-122-5p chr18 58451088 58451109 + hsa-miR-185-5p chr22 20033153 20033174 + hsa-miR-650 chr22 22822791 22822811 + hsa-miR-654-5p chr14 101040234 101040255 + hsa-miR-1321 chrX 85835832 85835849 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC023509.1 chr12 53441741 53467528 + AC079807.1 chr2 47905678 47907810 + AC106886.2 chr16 30740667 30751381 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA