exRNAdisease

Entry Detail

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General Information

Database ID: exR0385163 RNA Name: RAN RNA Type: mRNA Chromosome: chr12 Starnd: + Coordinate: Start Site(bp): 130872037 End Site(bp): 130877678 External Links: ENSG00000132341

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABT1 chr6 26596953 26600739 + AC004997.1 chr22 30285238 30299482 - AC006030.1 chr2 74211604 74363377 - AC010132.3 chr7 42909273 42932174 - AC092073.1 chr19 34396315 34409364 + AC124312.1 chr15 24955034 25000276 + AC135050.2 chr16 31083439 31094956 - ACAA2 chr18 49782164 49813953 - ACADVL chr17 7217125 7225266 + ACIN1 chr14 23058564 23095614 - ACO1 chr9 32384603 32454769 + ACO2 chr22 41469117 41528989 + ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ACTR5 chr20 38748460 38772520 + ADAT3 chr19 1905399 1913447 + ADCY3 chr2 24819169 24919839 - ADGRG1 chr16 57610652 57665580 + ADH5 chr4 99070978 99088801 - ADSL chr22 40346500 40390463 + AEN chr15 88621337 88632281 + AFDN chr6 167826922 167972023 + AGO3 chr1 35930718 36072500 + AGPAT3 chr21 43865223 43987592 + AIF1L chr9 131096476 131123152 + AKAP1 chr17 57085092 57121346 + AKIRIN1 chr1 38991276 39006059 + AL021546.1 chr12 120438198 120460006 + AL022238.4 chr22 40346529 40410054 + AL136295.4 chr14 24180395 24190416 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-302b-3p chr4 112648489 112648511 - hsa-miR-302a-5p chr4 112648224 112648246 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC012236.1 chr15 31221999 31230838 - AC079781.5 chr7 97851688 97972985 - AC106864.1 chr4 112693047 112706810 - AC113189.4 chr17 7439506 7445966 + AC245014.3 chr1 145281116 145281462 + AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA