exRNAdisease

Entry Detail

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General Information

Database ID: exR0385239 RNA Name: RBBP4 RNA Type: mRNA Chromosome: chr1 Starnd: + Coordinate: Start Site(bp): 32651142 End Site(bp): 32686211 External Links: ENSG00000162521

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCC1 chr16 15949577 16143074 + ABTB2 chr11 34150987 34358010 - AC004832.3 chr22 30409255 30428990 + AC005943.1 chr19 1578339 1605445 - AC073508.2 chr17 40627356 40665141 - AC098484.3 chr1 42767292 42794493 + AHCYL1 chr1 109984765 110023742 + AKAP1 chr17 57085092 57121346 + AKR1A1 chr1 45550543 45570049 + AL590132.1 chr1 210858125 211134146 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007952.4 chr17 19112000 19112636 - AC105429.1 chr16 87470370 87474370 - AC245014.3 chr1 145281116 145281462 + AL022311.1 chr22 37876148 37895563 + AL133342.1 chr20 48821688 48849458 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA