exRNAdisease

Entry Detail

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General Information

Database ID: exR0385249 RNA Name: RBFOX2 RNA Type: mRNA Chromosome: chr22 Starnd: - Coordinate: Start Site(bp): 35738736 End Site(bp): 36028824 External Links: ENSG00000100320

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AAGAB chr15 67200667 67255195 - AASDH chr4 56338287 56387508 - ABCF1 chr6 30571393 30597179 + ACP1 chr2 264140 278283 + ACSF3 chr16 89088375 89164121 + ADGRL3 chr4 61201258 62078335 + AIMP2 chr7 6009255 6023834 + ALAS1 chr3 52198086 52214327 + ALDH1A3 chr15 100877714 100916626 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-25-3p chr7 100093571 100093592 - hsa-miR-92a-3p chrX 134169544 134169565 - hsa-miR-183-5p chr7 129774967 129774988 - hsa-miR-185-5p chr22 20033153 20033174 + hsa-miR-367-3p chr4 112647877 112647898 - hsa-miR-325 chrX 77005464 77005486 - hsa-miR-491-5p chr9 20716120 20716141 + hsa-miR-92b-3p chr1 155195237 155195258 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC005618.1 chr5 141326210 141329357 + AC007952.4 chr17 19112000 19112636 - AC020928.1 chr19 36773112 36777078 + AC040934.1 chr17 47409322 47423526 - AC084125.2 chr8 144495458 144505444 - AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA