exRNAdisease

Entry Detail

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General Information

Database ID: exR0385474 RNA Name: RHOA RNA Type: mRNA Chromosome: chr3 Starnd: - Coordinate: Start Site(bp): 49359145 End Site(bp): 49412998 External Links: ENSG00000067560

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC012254.2 chr18 47108188 47176345 - AL603832.3 chr1 112702614 112711433 - AKAP9 chr7 91940867 92110673 + AC010422.3 chr19 12643831 12648397 - AC008982.1 chr19 38817471 38840178 - AC087289.3 chr17 75898645 75930129 - AL928654.3 chr14 105487199 105492267 + AC023055.1 chr12 55757275 55827546 - ABCE1 chr4 145098288 145129524 + ADIPOR1 chr1 202940826 202958572 - ADAM10 chr15 58588809 58749791 - ACAT2 chr6 159762045 159779112 + AL022238.4 chr22 40346529 40410054 + AC007192.1 chr19 18153158 18178117 + AHCY chr20 34280268 34311802 - AC008763.3 chr19 7678501 7682854 + ACTB chr7 5527148 5563784 - ADSL chr22 40346500 40390463 + ABHD14B chr3 51968510 51983409 - ACACA chr17 37084992 37406836 - ACIN1 chr14 23058564 23095614 - ACTG1 chr17 81509971 81523847 - AL590764.2 chrX 71103987 71111575 - AC135050.2 chr16 31083439 31094956 - ADNP2 chr18 80109262 80147523 + AC245033.1 chr15 82536788 82573194 - ACTL6A chr3 179562886 179588407 + AC027796.3 chr17 3585149 3636249 - ADCY1 chr7 45574140 45723116 + AK2 chr1 33007940 33080996 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-122-5p chr18 58451088 58451109 + hsa-miR-130b-3p chr22 21653354 21653375 + hsa-miR-454-3p chr17 59137787 59137809 - hsa-miR-1244 chr2 231713368 231713393 + hsa-miR-4284 chr7 73711327 73711344 + hsa-miR-4492 chr11 118910765 118910781 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC005062.1 chr7 19918981 20140453 - AC007952.4 chr17 19112000 19112636 - AC023509.1 chr12 53441741 53467528 + AC073050.1 chr2 167293171 167558333 + AC093227.1 chr19 37728586 37730643 - AC245033.4 chr15 82533175 82540008 - AL022311.1 chr22 37876148 37895563 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA