exRNAdisease

Entry Detail

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General Information

Database ID: exR0385653 RNA Name: RNPS1 RNA Type: mRNA Chromosome: chr16 Starnd: - Coordinate: Start Site(bp): 2253116 End Site(bp): 2268397 External Links: ENSG00000205937

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AARSD1 chr17 42950526 42964498 - ABCF1 chr6 30571393 30597179 + AC138696.1 chr8 143247110 143276403 + ACTG1 chr17 81509971 81523847 - ADCY3 chr2 24819169 24919839 - AFDN chr6 167826922 167972023 + AGO1 chr1 35869808 35930532 + AHCYL2 chr7 129225023 129430211 + AL513165.2 chr9 37512547 37592469 - AL590132.1 chr1 210858125 211134146 - ALDH7A1 chr5 126531200 126595362 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-572 chr4 11368887 11368906 + hsa-miR-3654 chr7 133034860 133034878 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007406.5 chr12 273954 277123 - AC091564.7 chr11 6610883 6616594 - ADD3-AS1 chr10 109940104 110008381 - AL022311.1 chr22 37876148 37895563 + AL121992.1 chr1 15586136 15603626 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA