exRNAdisease

Entry Detail

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General Information

Database ID: exR0385704 RNA Name: RPL17 RNA Type: mRNA Chromosome: chr18 Starnd: - Coordinate: Start Site(bp): 49488453 End Site(bp): 49492523 External Links: ENSG00000265681

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AAR2 chr20 36236459 36270918 + ABCC1 chr16 15949577 16143074 + ABHD2 chr15 89087459 89202355 + ABL1 chr9 130713016 130887675 + AC018523.2 chr11 14493783 14520344 - AC020909.1 chr19 50415799 50428409 + AC138811.2 chr16 18788063 18801519 - ACO1 chr9 32384603 32454769 + ACTG1 chr17 81509971 81523847 - AHCY chr20 34280268 34311802 - AK3 chr9 4709556 4742043 - AKIRIN1 chr1 38991276 39006059 + AKR1A1 chr1 45550543 45570049 + AKT2 chr19 40230317 40285536 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-92a-3p chrX 134169544 134169565 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC021078.1 chr5 149494314 149504670 - AC023509.1 chr12 53441741 53467528 + AC040162.3 chr16 67882461 67886367 + AC068338.3 chr15 75346744 75347161 - AC093152.1 chr1 222815064 222994906 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA