exRNAdisease

Entry Detail

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General Information

Database ID: exR0385716 RNA Name: RPL27 RNA Type: mRNA Chromosome: chr17 Starnd: + Coordinate: Start Site(bp): 42998273 End Site(bp): 43002959 External Links: ENSG00000131469

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AAAS chr12 53307456 53324864 - AAGAB chr15 67200667 67255195 - AARSD1 chr17 42950526 42964498 - AC010422.3 chr19 12643831 12648397 - AC018523.2 chr11 14493783 14520344 - AC025165.3 chr12 57772660 57797554 + AC092073.1 chr19 34396315 34409364 + AC093525.2 chr16 2496032 2520218 + AC138811.2 chr16 18788063 18801519 - AC245033.1 chr15 82536788 82573194 - ACADM chr1 75724347 75787575 + ACO1 chr9 32384603 32454769 + ACOT11 chr1 54542257 54639192 + ACSS1 chr20 25006230 25058980 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ACTR2 chr2 65227753 65271253 + ACVR2B chr3 38453890 38493142 + ADM5 chr19 49688664 49690575 + AFTPH chr2 64524305 64593005 + AIF1L chr9 131096476 131123152 + AIMP1 chr4 106315544 106349456 + AKAP10 chr17 19904302 19978343 - AL121594.1 chr14 35122549 35317474 + AL358113.1 chr9 69035747 69255187 + AL365205.1 chr6 41780349 41790141 + ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-142-3p chr17 58331245 58331267 - hsa-miR-302d-3p chr4 112648006 112648028 - hsa-miR-4485-3p chr11 10508277 10508296 - hsa-miR-7705 chr8 100703002 100703024 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004687.1 chr17 58330884 58332508 - AC007952.4 chr17 19112000 19112636 - AC016027.1 chr22 18076527 18078884 - AC020663.1 chr16 4730115 4752565 - AC026362.1 chr12 122975320 122982907 + AC084082.1 chr8 66112667 66126632 + AC108134.2 chr16 3156736 3157483 - AC245033.4 chr15 82533175 82540008 - AL022311.1 chr22 37876148 37895563 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA