exRNAdisease

Entry Detail

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General Information

Database ID: exR0385718 RNA Name: RPL28 RNA Type: mRNA Chromosome: chr19 Starnd: + Coordinate: Start Site(bp): 55385345 End Site(bp): 55403250 External Links: ENSG00000108107

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCD3 chr1 94418389 94518666 + AC004832.3 chr22 30409255 30428990 + AC004922.1 chr7 99325879 99394653 + AC005258.1 chr19 2269525 2341172 + AC006064.6 chr12 6556886 6607367 - AC010323.1 chr19 8308283 8321379 - AC010422.3 chr19 12643831 12648397 - AC024592.3 chr19 5866171 5903787 - AC073508.2 chr17 40627356 40665141 - AC093525.2 chr16 2496032 2520218 + AC104389.5 chr11 5254392 5678434 - AC138811.2 chr16 18788063 18801519 - ACAT2 chr6 159762045 159779112 + ACLY chr17 41866917 41930542 - ACO2 chr22 41469117 41528989 + ACTA1 chr1 229431245 229434098 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ADGRL1 chr19 14147743 14206187 - AEBP2 chr12 19404045 19720801 + AGRN chr1 1020120 1056118 + AHCY chr20 34280268 34311802 - AKAP13 chr15 85380571 85749358 + AL049629.2 chr11 33698261 33722467 - AL669918.1 chr6 32813767 32838822 - ALAS1 chr3 52198086 52214327 + ALDH2 chr12 111766887 111817532 + ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-6805-5p chr19 55388186 55388207 + hsa-miR-6805-3p chr19 55388220 55388242 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007952.4 chr17 19112000 19112636 - AC010327.5 chr19 55216660 55221616 + AC012360.3 chr2 105334027 105337475 - AC016747.1 chr2 61141592 61144969 - AC020928.2 chr19 36773712 36775908 - AC026362.1 chr12 122975320 122982907 + AC026471.1 chr16 31456711 31459736 - AC091564.7 chr11 6610883 6616594 - AC139149.1 chr17 81514047 81527776 + AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA