exRNAdisease

Entry Detail

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General Information

Database ID: exR0385720 RNA Name: RPL3 RNA Type: mRNA Chromosome: chr22 Starnd: - Coordinate: Start Site(bp): 39312882 End Site(bp): 39320389 External Links: ENSG00000100316

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABLIM1 chr10 114431113 114768061 - AC046185.1 chr17 63702845 63752097 - ACSS1 chr20 25006230 25058980 - AIF1L chr9 131096476 131123152 + AC105052.3 chr7 102637049 102671641 - AKAP11 chr13 42272152 42323261 + AHCYL1 chr1 109984765 110023742 + ADK chr10 74151202 74709963 + ADORA2A chr22 24417879 24442357 + ADCY5 chr3 123282296 123449758 - ALDOA chr16 30064164 30070457 + ADAMTS19 chr5 129460281 129738683 + AC012254.2 chr18 47108188 47176345 - ADGRG5 chr16 57542643 57591681 + AC023055.1 chr12 55757275 55827546 - AC002985.1 chr19 18907013 18934397 - AC073508.2 chr17 40627356 40665141 - AC011448.1 chr19 19516227 19536076 + AFG3L2 chr18 12328944 12377227 - ADD1 chr4 2843857 2930076 + AC018523.2 chr11 14493783 14520344 - AGBL3 chr7 134986508 135147963 + AC010422.3 chr19 12643831 12648397 - ACO2 chr22 41469117 41528989 + AKR1B1 chr7 134442356 134459284 - AL136454.1 chr1 192716132 192716653 + AC129492.3 chr17 8150816 8162975 - AASDHPPT chr11 106075501 106098699 + ACTG1 chr17 81509971 81523847 - AARSD1 chr17 42950526 42964498 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-3654 chr7 133034860 133034878 - hsa-miR-4426 chr1 192716333 192716349 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004687.1 chr17 58330884 58332508 - AC005899.4 chr17 32328441 32329395 + AC007780.1 chr17 68413623 68524949 + AC007952.4 chr17 19112000 19112636 - AC021078.1 chr5 149494314 149504670 - AC022211.4 chr17 75138416 75141350 - AC023509.1 chr12 53441741 53467528 + AC026362.1 chr12 122975320 122982907 + AC026979.2 chr8 30155830 30156232 - AC091564.7 chr11 6610883 6616594 - AC109460.3 chr16 28974804 28990775 + AC113189.2 chr17 7420103 7444081 + AC113189.4 chr17 7439506 7445966 + AC115284.1 chr3 51961212 51974031 - AC132217.1 chr11 2129121 2129964 - AC239868.1 chr1 149861271 149862504 + AC245014.3 chr1 145281116 145281462 + AD000090.1 chr19 35557956 35581954 + AL022311.1 chr22 37876148 37895563 + AL136419.1 chr14 23969931 24051377 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA