exRNAdisease

Entry Detail

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General Information

Database ID: exR0385776 RNA Name: RPS2 RNA Type: mRNA Chromosome: chr16 Starnd: - Coordinate: Start Site(bp): 1962058 End Site(bp): 1964841 External Links: ENSG00000140988

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC087289.3 chr17 75898645 75930129 - ADSL chr22 40346500 40390463 + ACTR3 chr2 113890063 113962596 + ADPRH chr3 119579268 119589945 + ADAR chr1 154582057 154628013 - AC138811.2 chr16 18788063 18801519 - ALDOA chr16 30064164 30070457 + AHCY chr20 34280268 34311802 - AL133352.1 chr10 100505628 100529881 - AC093525.2 chr16 2496032 2520218 + AC007192.1 chr19 18153158 18178117 + AL590764.2 chrX 71103987 71111575 - AC004832.3 chr22 30409255 30428990 + AL669918.1 chr6 32813767 32838822 - AC024592.3 chr19 5866171 5903787 - AC010422.3 chr19 12643831 12648397 - AL136295.1 chr14 24189157 24213473 - ADGRG5 chr16 57542643 57591681 + ADGRB1 chr8 142449430 142545009 + AL021546.1 chr12 120438198 120460006 + AC093525.1 chr16 2513965 2527955 + AL022238.4 chr22 40346529 40410054 + AGAP4 chr10 45825594 45853875 - AC092143.1 chr16 89919165 89936092 + AC015813.2 chr17 57989038 58007246 - AC107871.1 chr15 68184032 68229718 - AGAP3 chr7 151085831 151144436 + AL603832.3 chr1 112702614 112711433 - ACTG1 chr17 81509971 81523847 - AC069503.2 chr12 121888809 121921470 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-1244 chr2 231713368 231713393 + hsa-miR-7111-3p chr6 35470558 35470579 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007952.4 chr17 19112000 19112636 - AC010542.4 chr16 66549280 66551189 + AC087190.3 chr16 9104848 9113181 + AC087521.3 chr11 43921059 44001157 + AC108134.2 chr16 3156736 3157483 - AC245033.4 chr15 82533175 82540008 - AD000090.1 chr19 35557956 35581954 + AL022311.1 chr22 37876148 37895563 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA