exRNAdisease

Entry Detail

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General Information

Database ID: exR0385805 RNA Name: RPS8 RNA Type: mRNA Chromosome: chr1 Starnd: + Coordinate: Start Site(bp): 44775251 End Site(bp): 44778779 External Links: ENSG00000142937

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ACVR1B chr12 51951699 51997078 + AL021546.1 chr12 120438198 120460006 + AC073508.2 chr17 40627356 40665141 - AC008758.1 chr19 12461559 12551474 - ACAT1 chr11 108116695 108147603 + AC120057.2 chr17 7240427 7244635 - AC138811.2 chr16 18788063 18801519 - ADNP chr20 50888916 50931437 - AHCYL1 chr1 109984765 110023742 + AGL chr1 99850361 99924023 + ABI3 chr17 49210411 49223225 + ACTG1 chr17 81509971 81523847 - ACTR1B chr2 97655939 97664044 - ACTA2 chr10 88935074 88991339 - AL136295.5 chr14 24147548 24166452 + ABRACL chr6 139028745 139043302 + AKIRIN1 chr1 38991276 39006059 + AKT1 chr14 104769349 104795751 - ACTA1 chr1 229431245 229434098 - AL669918.1 chr6 32813767 32838822 - AHRR chr5 271670 438291 + ABCD4 chr14 74285269 74303055 - AGPAT3 chr21 43865223 43987592 + AEN chr15 88621337 88632281 + AC002985.1 chr19 18907013 18934397 - AKR7A2 chr1 19303965 19312146 - ADRM1 chr20 62302093 62308862 + AC022384.1 chr3 10249372 10285796 + ADAR chr1 154582057 154628013 - ADD1 chr4 2843857 2930076 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-92a-3p chrX 134169544 134169565 - hsa-miR-367-3p chr4 112647877 112647898 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC063949.2 chr12 92421531 92483680 + AC090772.3 chr18 24159509 24162211 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA