exRNAdisease

Entry Detail

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General Information

Database ID: exR0386187 RNA Name: SENP3-EIF4A1 RNA Type: mRNA Chromosome: chr17 Starnd: + Coordinate: Start Site(bp): 7563287 End Site(bp): 7578715 External Links: ENSG00000277957

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCA2 chr9 137007234 137028922 - ABCB8 chr7 151028422 151047782 + ABRACL chr6 139028745 139043302 + AC004080.3 chr7 27163535 27180013 - AC004922.1 chr7 99325879 99394653 + AC004997.1 chr22 30285238 30299482 - AC011511.4 chr19 10315471 10320678 - AC092143.1 chr16 89919165 89936092 + AC104109.3 chr5 134167170 134226071 - AC245033.1 chr15 82536788 82573194 - ACAP3 chr1 1292390 1309609 - ACSS3 chr12 80936414 81261210 + ACTB chr7 5527148 5563784 - ACTN4 chr19 38647649 38731589 + ADIPOR1 chr1 202940826 202958572 - AFAP1 chr4 7758714 7939926 - AK1 chr9 127866486 127877675 - AKAP1 chr17 57085092 57121346 + ALDH18A1 chr10 95605941 95656711 - ALDH7A1 chr5 126531200 126595362 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-129-5p chr7 128207876 128207896 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC016876.2 chr17 7581964 7584086 - AC064802.1 chr8 114282067 114295839 + AC245033.4 chr15 82533175 82540008 - AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA