exRNAdisease

Entry Detail

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General Information

Database ID: exR0386199 RNA Name: SERF2 RNA Type: mRNA Chromosome: chr15 Starnd: + Coordinate: Start Site(bp): 43777087 End Site(bp): 43802589 External Links: ENSG00000140264

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AATF chr17 36948954 37056871 + ABCB4 chr7 87401697 87480435 - AC005258.1 chr19 2269525 2341172 + AC005943.1 chr19 1578339 1605445 - AC023055.1 chr12 55757275 55827546 - AC073896.1 chr12 56285916 56316059 - AC099811.2 chr17 42119674 42154916 - AC120057.2 chr17 7240427 7244635 - ACLY chr17 41866917 41930542 - ACTB chr7 5527148 5563784 - ACTC1 chr15 34790230 34795549 - ACTG1 chr17 81509971 81523847 - ACTR8 chr3 53867066 53882152 - ADA chr20 44619522 44652233 - ADD3 chr10 109996368 110135565 + ADIPOR1 chr1 202940826 202958572 - AGAP4 chr10 45825594 45853875 - AHCY chr20 34280268 34311802 - AL049629.2 chr11 33698261 33722467 - AL121753.1 chr20 35267885 35280043 - AL136295.1 chr14 24189157 24213473 - AL136295.4 chr14 24180395 24190416 - AL139260.3 chr1 38864501 38881617 - ALDH18A1 chr10 95605941 95656711 - ALDH4A1 chr1 18871430 18902724 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-31-5p chr9 21512158 21512178 - hsa-miR-296-3p chr20 58817626 58817647 - hsa-miR-423-5p chr17 30117095 30117117 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC005618.1 chr5 141326210 141329357 + AC016876.2 chr17 7581964 7584086 - AC126365.1 chr17 20788071 20789584 + AL121603.2 chr14 34874343 34876459 + AL132780.1 chr14 22929607 22956374 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA