exRNAdisease

Entry Detail

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General Information

Database ID: exR0386249 RNA Name: SET RNA Type: mRNA Chromosome: chr9 Starnd: + Coordinate: Start Site(bp): 128683424 End Site(bp): 128696400 External Links: ENSG00000119335

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AATF chr17 36948954 37056871 + ABCB8 chr7 151028422 151047782 + ABCC6 chr16 16148928 16223522 - AC007846.2 chr17 5772926 6080792 + AC010463.1 chr19 17267418 17282966 + AC012254.2 chr18 47108188 47176345 - AC138811.2 chr16 18788063 18801519 - ACACA chr17 37084992 37406836 - ACBD3 chr1 226144679 226186741 - ACTB chr7 5527148 5563784 - ACTN4 chr19 38647649 38731589 + ADM chr11 10305073 10307397 + AGO3 chr1 35930718 36072500 + AHCYL1 chr1 109984765 110023742 + AKAP12 chr6 151239967 151358559 + AL139011.2 chr1 160216800 160285130 - AL590132.1 chr1 210858125 211134146 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-3648 chr21 8987026 8987046 + hsa-miR-6728-3p chr1 8866502 8866522 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC016876.2 chr17 7581964 7584086 - AC023509.1 chr12 53441741 53467528 + AC124068.2 chr15 89335053 89336161 + AL121985.1 chr1 160670778 160699761 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA