exRNAdisease

Entry Detail

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General Information

Database ID: exR0386268 RNA Name: SF1 RNA Type: mRNA Chromosome: chr11 Starnd: - Coordinate: Start Site(bp): 64764606 End Site(bp): 64778786 External Links: ENSG00000168066

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AATF chr17 36948954 37056871 + AC005258.1 chr19 2269525 2341172 + AC008750.8 chr19 51350373 51368099 - AC008878.3 chr19 7382834 7470241 + AC011005.1 chr7 129126518 129130793 + AC015813.2 chr17 57989038 58007246 - AC245033.1 chr15 82536788 82573194 - ACAD9 chr3 128879596 128916067 + ACTB chr7 5527148 5563784 - ACTR2 chr2 65227753 65271253 + AKR1B1 chr7 134442356 134459284 - AL031708.1 chr16 1632259 1686715 + ALDOA chr16 30064164 30070457 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007952.4 chr17 19112000 19112636 - AC012321.1 chr16 69703065 69704652 + AC022336.2 chr3 124723788 124726325 + AD000090.1 chr19 35557956 35581954 + AL121992.1 chr1 15586136 15603626 - AL137127.1 chr1 19072110 19075511 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA