exRNAdisease

Entry Detail

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General Information

Database ID: exR0386282 RNA Name: SFPQ RNA Type: mRNA Chromosome: chr1 Starnd: - Coordinate: Start Site(bp): 35176378 End Site(bp): 35193145 External Links: ENSG00000116560

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AAAS chr12 53307456 53324864 - ABLIM1 chr10 114431113 114768061 - AC008982.1 chr19 38817471 38840178 - AC010422.3 chr19 12643831 12648397 - AC091551.1 chr18 50968019 51058144 + AC105052.3 chr7 102637049 102671641 - AC118553.2 chr1 99970011 100083321 + ACSS1 chr20 25006230 25058980 - ACTR2 chr2 65227753 65271253 + ADAMTSL4 chr1 150549369 150560937 + ADGRA3 chr4 22345071 22516066 - ADORA2A chr22 24417879 24442357 + AGO4 chr1 35808016 35857890 + AHCY chr20 34280268 34311802 - AKR1A1 chr1 45550543 45570049 + AL117339.5 chr10 38094368 38360098 + AL136295.5 chr14 24147548 24166452 + AL365205.1 chr6 41780349 41790141 + ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-205-5p chr1 209432166 209432187 + hsa-miR-3652 chr12 103930425 103930442 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC006504.5 chr19 27793431 27984984 + AC067930.1 chr8 143579636 143580670 + AD000090.1 chr19 35557956 35581954 + AL022311.1 chr22 37876148 37895563 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA