exRNAdisease

Entry Detail

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General Information

Database ID: exR0386381 RNA Name: SHISA5 RNA Type: mRNA Chromosome: chr3 Starnd: - Coordinate: Start Site(bp): 48467798 End Site(bp): 48504826 External Links: ENSG00000164054

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABTB2 chr11 34150987 34358010 - AC004832.3 chr22 30409255 30428990 + AC012254.2 chr18 47108188 47176345 - AC015813.2 chr17 57989038 58007246 - AC068580.4 chr11 1734821 1763954 - AC073896.1 chr12 56285916 56316059 - AC138811.2 chr16 18788063 18801519 - ACTG1 chr17 81509971 81523847 - ADD2 chr2 70607618 70768225 - AGAP3 chr7 151085831 151144436 + AL035078.4 chr11 31812391 32104665 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-147a chr9 120244985 120245004 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC027307.3 chr19 1440839 1441938 + AC118758.3 chr7 56809214 56848800 - AC132217.1 chr11 2129121 2129964 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA