exRNAdisease

Entry Detail

---



General Information

Database ID: exR0386589 RNA Name: SLC25A3 RNA Type: mRNA Chromosome: chr12 Starnd: + Coordinate: Start Site(bp): 98593591 End Site(bp): 98606379 External Links: ENSG00000075415

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABHD17A chr19 1876810 1885547 - ABT1 chr6 26596953 26600739 + AC023055.1 chr12 55757275 55827546 - AC091167.2 chr15 90249556 90272208 + AC092835.1 chr2 95207535 95259774 + AC093525.2 chr16 2496032 2520218 + AC245033.1 chr15 82536788 82573194 - ACTA1 chr1 229431245 229434098 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ACTG2 chr2 73892314 73919865 + ACTR2 chr2 65227753 65271253 + ACY1 chr3 51983340 51989197 + ADIPOR1 chr1 202940826 202958572 - AHCY chr20 34280268 34311802 - AICDA chr12 8602170 8612867 - AKAP12 chr6 151239967 151358559 + AKIRIN1 chr1 38991276 39006059 + AL117348.2 chr1 225886696 225924278 - AL355315.1 chr10 97584374 97673910 + AL355987.1 chr9 136738167 136748453 - AL358113.1 chr9 69035747 69255187 + ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-205-5p chr1 209432166 209432187 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007406.5 chr12 273954 277123 - AC087239.1 chr12 25385670 25386241 - AC106886.2 chr16 30740667 30751381 + AC245014.3 chr1 145281116 145281462 + AC245033.4 chr15 82533175 82540008 - AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA