exRNAdisease

Entry Detail

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General Information

Database ID: exR0386613 RNA Name: SLC25A6 RNA Type: mRNA Chromosome: chrX Starnd: - Coordinate: Start Site(bp): 1386152 End Site(bp): 1392113 External Links: ENSG00000169100

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC005943.1 chr19 1578339 1605445 - AC018523.2 chr11 14493783 14520344 - AHCY chr20 34280268 34311802 - ACBD3 chr1 226144679 226186741 - AK2 chr1 33007940 33080996 - AC087289.3 chr17 75898645 75930129 - AL358113.1 chr9 69035747 69255187 + ACTG1 chr17 81509971 81523847 - ACLY chr17 41866917 41930542 - AC007192.1 chr19 18153158 18178117 + AL022238.4 chr22 40346529 40410054 + AC020915.5 chr19 58228914 58315183 + ACOT7 chr1 6264269 6394391 - AL133352.1 chr10 100505628 100529881 - ADGRL2 chr1 81306160 81992436 + ACTB chr7 5527148 5563784 - AC104109.3 chr5 134167170 134226071 - AKIP1 chr11 8911139 8920084 + AC245033.1 chr15 82536788 82573194 - AC091167.2 chr15 90249556 90272208 + ACVR2B chr3 38453890 38493142 + AKT2 chr19 40230317 40285536 - AC026464.4 chr16 69299682 69322700 + ALDH18A1 chr10 95605941 95656711 - ADAR chr1 154582057 154628013 - AL109827.1 chr20 35632340 35674544 - ADPRHL2 chr1 36088892 36093932 + AC012651.1 chr15 42348103 42412317 + AC138811.2 chr16 18788063 18801519 - ACAD9 chr3 128879596 128916067 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-1182 chr1 231019841 231019863 - hsa-miR-7847-3p chr11 1880105 1880125 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC005899.4 chr17 32328441 32329395 + AC007773.1 chr19 32390050 32405560 - AC007952.4 chr17 19112000 19112636 - AC010331.1 chr19 47607873 47608454 - AC016355.1 chr15 67541072 67542604 - AC016876.2 chr17 7581964 7584086 - AC017083.1 chr2 68252870 68253848 + AC018521.1 chr17 47945424 47981736 + AC020663.1 chr16 4730115 4752565 - AC025181.2 chr5 32174471 32175272 + AC026362.1 chr12 122975320 122982907 + AC026803.2 chr19 48963975 48965158 + AC114271.1 chr19 10333436 10336248 + AC139149.1 chr17 81514047 81527776 + AC140125.2 chr5 177782197 177794396 + AC245014.3 chr1 145281116 145281462 + AD000090.1 chr19 35557956 35581954 + AL022311.1 chr22 37876148 37895563 + AL117378.1 chr6 131901963 131920565 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA