exRNAdisease

Entry Detail

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General Information

Database ID: exR0386637 RNA Name: SLC2A1 RNA Type: mRNA Chromosome: chr1 Starnd: - Coordinate: Start Site(bp): 42925375 End Site(bp): 42958868 External Links: ENSG00000117394

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AASDHPPT chr11 106075501 106098699 + ABCF1 chr6 30571393 30597179 + AC073508.2 chr17 40627356 40665141 - AC091167.2 chr15 90249556 90272208 + AC108488.2 chr2 3532008 3558333 - AC245033.1 chr15 82536788 82573194 - ACIN1 chr14 23058564 23095614 - ACTG1 chr17 81509971 81523847 - ACTN4 chr19 38647649 38731589 + ACTR3B chr7 152759749 152855378 + ADGRA3 chr4 22345071 22516066 - AHCY chr20 34280268 34311802 - AHCYL2 chr7 129225023 129430211 + AKIP1 chr11 8911139 8920084 + AKIRIN1 chr1 38991276 39006059 + AL022238.4 chr22 40346529 40410054 + AL136454.1 chr1 192716132 192716653 + AL603832.3 chr1 112702614 112711433 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-3654 chr7 133034860 133034878 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AL035458.2 chr20 34234840 34281173 - AL137127.1 chr1 19072110 19075511 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA