exRNAdisease

Entry Detail

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General Information

Database ID: exR0386702 RNA Name: SLC38A1 RNA Type: mRNA Chromosome: chr12 Starnd: - Coordinate: Start Site(bp): 46183063 End Site(bp): 46270017 External Links: ENSG00000111371

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC009133.6 chr16 29812261 29820092 + AC018523.2 chr11 14493783 14520344 - AC090004.1 chr3 14135217 14148252 + AC091959.3 chr5 146203550 146339251 + AC093525.2 chr16 2496032 2520218 + ACADM chr1 75724347 75787575 + ADAM19 chr5 157395534 157575775 - ADAMTS19 chr5 129460281 129738683 + ADGRV1 chr5 90529344 91164437 + ADH5 chr4 99070978 99088801 - AKIRIN1 chr1 38991276 39006059 + AKT2 chr19 40230317 40285536 - AL121594.1 chr14 35122549 35317474 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC002310.1 chr16 30534752 30537149 + AC132217.1 chr11 2129121 2129964 - AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA