exRNAdisease

Entry Detail

General Information

Database ID:

exR0386798

RNA Name:

SLC7A1

RNA Type:

mRNA

Chromosome:

chr13

Starnd:

-

Coordinate:

Start Site(bp):

29509414

End Site(bp):

29595688

External Links:

ENSG00000139514

Disease Information

Disease Name:	Low Birth Weight
Disease Category:	Other Diseases
MeSH ID:	D007230
Type:	Age Groups/Infant
Alias:	Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID:	GSE29807
Description:	Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns
Experimental Design:	Disease vs Control
Case Disease Type:	Low Birth Weight
Case Disease SubType:	NA
Case Sample:	Low Birth Weight
Control Sample:	Normal
Number of Case:	8
Number of Control:	4
Number of Samples:	12

Regulatory Relationship

mRNA targets:

Gene Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
AC073896.1	chr12	56285916	56316059	-
ACTG1	chr17	81509971	81523847	-
AL360181.3	chr10	133380017	133420271	+

miRNA targets:

miRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
hsa-miR-147a	chr9	120244985	120245004	-
hsa-miR-423-3p	chr17	30117131	30117153	+
hsa-miR-574-5p	chr4	38868056	38868078	+
hsa-miR-1294	chr5	154347153	154347174	+
hsa-miR-1244	chr2	231713368	231713393	+

circRNA targets:

NA

lncRNA targets:

lncRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
AC137630.3	chr3	49029316	49029706	+
AD000090.1	chr19	35557956	35581954	+
AL136985.3	chr1	58715609	58771295	+

Display:

Experiment Detail

GEO ID:	GSE29807
Sample Source:	Cord Blood
Source Fraction:	Umblical Cord Blood
Platform:	GPL570
Method:	Microarray
Num of detected RNA Type:	1
Num of detected RNAs of this Type:	17063
Sample treatment protocol:	NA
RNA Extract protocol:	The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions.
RNA library preparation protocol:	Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID:	NA
Title:	NA
Author:	NA
Journal:	NA
Description:	NA