exRNAdisease

Entry Detail

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General Information

Database ID: exR0386883 RNA Name: SMARCB1 RNA Type: mRNA Chromosome: chr22 Starnd: + Coordinate: Start Site(bp): 23786931 End Site(bp): 23838008 External Links: ENSG00000099956

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC005258.1 chr19 2269525 2341172 + AC093525.1 chr16 2513965 2527955 + ACAD8 chr11 134253495 134265855 + ACIN1 chr14 23058564 23095614 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ACTN1 chr14 68874143 68979440 - ADCY3 chr2 24819169 24919839 - ADD3 chr10 109996368 110135565 + ADGRL1 chr19 14147743 14206187 - ADSL chr22 40346500 40390463 + AHCY chr20 34280268 34311802 - AKIRIN1 chr1 38991276 39006059 + AL022238.4 chr22 40346529 40410054 + AL121845.3 chr20 63708864 63739103 + AL136454.1 chr1 192716132 192716653 + ALDH16A1 chr19 49453225 49471050 + ALDOA chr16 30064164 30070457 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC008403.3 chr19 48547637 48597238 - AC016876.2 chr17 7581964 7584086 - AC019205.1 chr6 73263212 73301789 + AC079781.5 chr7 97851688 97972985 - AC132217.1 chr11 2129121 2129964 - AL035458.2 chr20 34234840 34281173 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA