exRNAdisease

Entry Detail

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General Information

Database ID: exR0386884 RNA Name: SMARCC1 RNA Type: mRNA Chromosome: chr3 Starnd: - Coordinate: Start Site(bp): 47585269 End Site(bp): 47782106 External Links: ENSG00000173473

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC009133.6 chr16 29812261 29820092 + AC010422.3 chr19 12643831 12648397 - AC116366.3 chr5 132410832 132646079 + AC120057.2 chr17 7240427 7244635 - AC138811.2 chr16 18788063 18801519 - AC245033.1 chr15 82536788 82573194 - ACSL3 chr2 222860942 222944639 + ACTR10 chr14 58200080 58235636 + ADAM10 chr15 58588809 58749791 - AFF4 chr5 132875395 132963634 - AGAP3 chr7 151085831 151144436 + AHCYL1 chr1 109984765 110023742 + AJUBA chr14 22971177 22982551 - AKAP1 chr17 57085092 57121346 + AKAP9 chr7 91940867 92110673 + AL136454.1 chr1 192716132 192716653 + AL358113.1 chr9 69035747 69255187 + ALDH9A1 chr1 165662216 165698863 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-1321 chrX 85835832 85835849 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC016876.2 chr17 7581964 7584086 - AC067930.1 chr8 143579636 143580670 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA