exRNAdisease

Entry Detail

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General Information

Database ID: exR0386990 RNA Name: SNRNP70 RNA Type: mRNA Chromosome: chr19 Starnd: + Coordinate: Start Site(bp): 49085419 End Site(bp): 49108605 External Links: ENSG00000104852

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABHD11 chr7 73736094 73738867 - AC005943.1 chr19 1578339 1605445 - AC010422.3 chr19 12643831 12648397 - AC104581.2 chr17 7925931 7930622 - ACSL4 chrX 109624244 109733403 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ADAMTS3 chr4 72280969 72569221 - AGRN chr1 1020120 1056118 + AHCY chr20 34280268 34311802 - AL359922.1 chr9 21802636 22029594 + ALDH18A1 chr10 95605941 95656711 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC002470.2 chr22 20979462 20998121 + AC007952.4 chr17 19112000 19112636 - AC010245.2 chr5 75608817 75609983 + AC012485.1 chr2 238231684 238255633 + AC012615.1 chr19 1874871 1876169 - AC025575.2 chr12 71047402 71118247 - AC108134.2 chr16 3156736 3157483 - AD000090.1 chr19 35557956 35581954 + AL136985.3 chr1 58715609 58771295 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA