exRNAdisease

Entry Detail

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General Information

Database ID: exR0386997 RNA Name: SNRPD2 RNA Type: mRNA Chromosome: chr19 Starnd: - Coordinate: Start Site(bp): 45687454 End Site(bp): 45692569 External Links: ENSG00000125743

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABAT chr16 8674596 8784575 + ABCB6 chr2 219209772 219218994 - ABCC1 chr16 15949577 16143074 + AC004832.3 chr22 30409255 30428990 + AC008750.8 chr19 51350373 51368099 - AC011511.4 chr19 10315471 10320678 - AC068946.2 chr2 219209772 219222738 - AC131160.1 chr3 183815568 183884889 - AC138811.2 chr16 18788063 18801519 - AC139530.2 chr17 81703371 81720539 + ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ADSL chr22 40346500 40390463 + AGPAT4 chr6 161129967 161274061 - AK6 chr5 69350984 69370013 - AL022238.4 chr22 40346529 40410054 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004069.1 chr4 105137280 105140619 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA