exRNAdisease

Entry Detail

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General Information

Database ID: exR0387059 RNA Name: SON RNA Type: mRNA Chromosome: chr21 Starnd: + Coordinate: Start Site(bp): 33543038 End Site(bp): 33577481 External Links: ENSG00000159140

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ACACA chr17 37084992 37406836 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ADAMTS1 chr21 26835755 26845409 - ADNP2 chr18 80109262 80147523 + ADSL chr22 40346500 40390463 + AFDN chr6 167826922 167972023 + AHCY chr20 34280268 34311802 - AIFM1 chrX 130129362 130165887 - AKAP8L chr19 15380050 15419141 - AL022238.4 chr22 40346529 40410054 + AL136454.1 chr1 192716132 192716653 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-143-3p chr5 149428978 149428998 + hsa-miR-6501-5p chr21 33550664 33550685 + hsa-miR-6501-3p chr21 33550705 33550727 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC051619.7 chr15 45200325 45200632 - AC105036.3 chr15 75527150 75601205 - AC132217.1 chr11 2129121 2129964 - AL021368.3 chr6 57855891 57856468 - AL135999.1 chr14 23561097 23568073 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA