exRNAdisease

Entry Detail

---



General Information

Database ID: exR0387088 RNA Name: SOX4 RNA Type: mRNA Chromosome: chr6 Starnd: + Coordinate: Start Site(bp): 21593751 End Site(bp): 21598619 External Links: ENSG00000124766

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC011005.1 chr7 129126518 129130793 + AC131160.1 chr3 183815568 183884889 - AC135050.2 chr16 31083439 31094956 - ACSF3 chr16 89088375 89164121 + ACTR1A chr10 102461881 102502712 - ADGRL1 chr19 14147743 14206187 - AEN chr15 88621337 88632281 + AFDN chr6 167826922 167972023 + AHCYL1 chr1 109984765 110023742 + AKAP9 chr7 91940867 92110673 + AKIRIN2 chr6 87674860 87702233 - AL162417.1 chr9 133098121 133163914 - ALDH16A1 chr19 49453225 49471050 + ALDH1B1 chr9 38392702 38398661 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-25-3p chr7 100093571 100093592 - hsa-miR-92a-3p chrX 134169544 134169565 - hsa-miR-378a-3p chr5 149732867 149732888 + hsa-miR-422a chr15 63870989 63871010 - hsa-miR-92b-3p chr1 155195237 155195258 + hsa-miR-483-5p chr11 2134181 2134202 - hsa-miR-7704 chr2 176188843 176188861 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007637.1 chr12 109111218 109125594 + AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA