exRNAdisease

Entry Detail

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General Information

Database ID: exR0387214 RNA Name: SPINT2 RNA Type: mRNA Chromosome: chr19 Starnd: + Coordinate: Start Site(bp): 38244035 End Site(bp): 38292615 External Links: ENSG00000167642

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC068946.1 chr2 219075329 219170827 - AC087289.3 chr17 75898645 75930129 - ACACA chr17 37084992 37406836 - ACTB chr7 5527148 5563784 - ACTR3 chr2 113890063 113962596 + ADO chr10 62804720 62808479 + AGO1 chr1 35869808 35930532 + AGPAT3 chr21 43865223 43987592 + AIDA chr1 222668013 222713210 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-1181 chr19 10403505 10403525 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC010719.1 chr7 25948657 25949403 - AC016876.2 chr17 7581964 7584086 - AC020663.1 chr16 4730115 4752565 - AC026362.1 chr12 122975320 122982907 + AC026904.2 chr8 48551527 48556441 - AC060780.1 chr17 43148368 43171037 - AC245014.3 chr1 145281116 145281462 + AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA