exRNAdisease

Entry Detail

---



General Information

Database ID: exR0387285 RNA Name: SREBF2 RNA Type: mRNA Chromosome: chr22 Starnd: + Coordinate: Start Site(bp): 41833079 End Site(bp): 41907307 External Links: ENSG00000198911

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AATF chr17 36948954 37056871 + ABCG2 chr4 88090150 88231628 - AC005258.1 chr19 2269525 2341172 + AC010422.3 chr19 12643831 12648397 - AC015813.2 chr17 57989038 58007246 - AC087289.3 chr17 75898645 75930129 - AC118549.1 chr1 77562416 77683419 - AC245033.1 chr15 82536788 82573194 - ACLY chr17 41866917 41930542 - ACO2 chr22 41469117 41528989 + ACSS3 chr12 80936414 81261210 + ACTB chr7 5527148 5563784 - ACTN1 chr14 68874143 68979440 - ADD2 chr2 70607618 70768225 - ADGRG6 chr6 142301854 142446266 + ADRM1 chr20 62302093 62308862 + AFDN chr6 167826922 167972023 + AGO2 chr8 140520156 140635633 - AKIRIN1 chr1 38991276 39006059 + AKIRIN2 chr6 87674860 87702233 - AL645941.2 chr6 32937364 32953122 - ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-185-5p chr22 20033153 20033174 + hsa-miR-625-5p chr14 65471116 65471136 + hsa-miR-650 chr22 22822791 22822811 + hsa-miR-423-5p chr17 30117095 30117117 + hsa-miR-33a-3p chr22 41900989 41901010 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007952.4 chr17 19112000 19112636 - AC026362.1 chr12 122975320 122982907 + AC064807.1 chr8 51899268 51949874 + AC078846.1 chr7 129604548 129611630 - AC106864.1 chr4 112693047 112706810 - AC132217.1 chr11 2129121 2129964 - AC135048.1 chr16 30948386 30956511 + AC138035.2 chr5 181329241 181342213 + AC245033.4 chr15 82533175 82540008 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA