exRNAdisease

Entry Detail

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General Information

Database ID: exR0387488 RNA Name: STRBP RNA Type: mRNA Chromosome: chr9 Starnd: - Coordinate: Start Site(bp): 123109500 End Site(bp): 123268586 External Links: ENSG00000165209

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCC1 chr16 15949577 16143074 + AC007192.1 chr19 18153158 18178117 + AC010422.3 chr19 12643831 12648397 - AC244197.3 chrX 149477104 149540926 - ACTR8 chr3 53867066 53882152 - ADA chr20 44619522 44652233 - AFF1 chr4 86935002 87141054 + ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-let-7g-5p chr3 52268336 52268357 - hsa-miR-27b-3p chr9 95085505 95085525 + hsa-miR-151a-3p chr8 140732587 140732607 - hsa-miR-520a-5p chr19 53690895 53690915 + hsa-miR-513a-5p chrX 147213538 147213555 - circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA