exRNAdisease

Entry Detail

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General Information

Database ID: exR0387562 RNA Name: SUPT16H RNA Type: mRNA Chromosome: chr14 Starnd: - Coordinate: Start Site(bp): 21351476 End Site(bp): 21384019 External Links: ENSG00000092201

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCA5 chr17 69244311 69327244 - ABCC4 chr13 95019835 95301475 - ABCG2 chr4 88090150 88231628 - AC022384.1 chr3 10249372 10285796 + AC073508.2 chr17 40627356 40665141 - AC087289.3 chr17 75898645 75930129 - ACBD6 chr1 180269653 180502954 - ACTG1 chr17 81509971 81523847 - ACTN1 chr14 68874143 68979440 - ACTR1B chr2 97655939 97664044 - AFDN chr6 167826922 167972023 + AGTPBP1 chr9 85546539 85742029 - AKR1A1 chr1 45550543 45570049 + ALDH7A1 chr5 126531200 126595362 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007952.4 chr17 19112000 19112636 - AC011731.1 chr18 23257164 23260354 - AC024940.6 chr12 31280422 31280895 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA