exRNAdisease

Entry Detail

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General Information

Database ID: exR0387714 RNA Name: TAGLN2 RNA Type: mRNA Chromosome: chr1 Starnd: - Coordinate: Start Site(bp): 159918107 End Site(bp): 159925732 External Links: ENSG00000158710

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004922.1 chr7 99325879 99394653 + AC010422.3 chr19 12643831 12648397 - AC011462.1 chr19 41350853 41425001 + AC090360.1 chr18 80034346 80097088 + AC093525.2 chr16 2496032 2520218 + ACADVL chr17 7217125 7225266 + ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ACTR8 chr3 53867066 53882152 - ADD3 chr10 109996368 110135565 + ADIPOR2 chr12 1688574 1788674 + ADPRHL2 chr1 36088892 36093932 + ADRM1 chr20 62302093 62308862 + AGK chr7 141551278 141655244 + AK4 chr1 65147549 65232145 + AKIP1 chr11 8911139 8920084 + AL035078.4 chr11 31812391 32104665 + AL136454.1 chr1 192716132 192716653 + AL590764.2 chrX 71103987 71111575 - ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-652-3p chrX 110055389 110055409 + hsa-miR-1294 chr5 154347153 154347174 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007952.4 chr17 19112000 19112636 - AC067852.2 chr17 42552436 42554748 - AC132192.2 chr11 9459556 9460702 - AL008721.2 chr22 25476218 25479971 + AL022311.1 chr22 37876148 37895563 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA