exRNAdisease

Entry Detail

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General Information

Database ID: exR0387735 RNA Name: TARDBP RNA Type: mRNA Chromosome: chr1 Starnd: + Coordinate: Start Site(bp): 11012344 End Site(bp): 11026420 External Links: ENSG00000120948

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC011448.1 chr19 19516227 19536076 + AC015813.2 chr17 57989038 58007246 - AC073508.2 chr17 40627356 40665141 - AC091167.2 chr15 90249556 90272208 + AC120057.2 chr17 7240427 7244635 - ACLY chr17 41866917 41930542 - ACOT2 chr14 73567620 73575658 + ACTA1 chr1 229431245 229434098 - ACTG1 chr17 81509971 81523847 - ADD1 chr4 2843857 2930076 + AGTRAP chr1 11736084 11754802 + AL136454.1 chr1 192716132 192716653 + ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-130a-3p chr11 57641252 57641273 + hsa-miR-130b-3p chr22 21653354 21653375 + hsa-miR-454-3p chr17 59137787 59137809 - hsa-miR-302e chr11 7234771 7234787 + hsa-let-7d-3p chr9 94178895 94178916 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC012485.1 chr2 238231684 238255633 + AC016876.2 chr17 7581964 7584086 - AC079781.5 chr7 97851688 97972985 - AC092490.1 chr12 8788253 8795789 + AC106864.1 chr4 112693047 112706810 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA