exRNAdisease

Entry Detail

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General Information

Database ID: exR0388122 RNA Name: TKT RNA Type: mRNA Chromosome: chr3 Starnd: - Coordinate: Start Site(bp): 53224712 End Site(bp): 53256052 External Links: ENSG00000163931

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCF1 chr6 30571393 30597179 + AC104532.1 chr19 5904841 5914707 + AC245033.1 chr15 82536788 82573194 - AC124312.1 chr15 24955034 25000276 + AC008982.1 chr19 38817471 38840178 - ACTR1A chr10 102461881 102502712 - ALDOA chr16 30064164 30070457 + ACO2 chr22 41469117 41528989 + ACAP1 chr17 7336529 7351477 + ABCA2 chr9 137007234 137028922 - AC104109.3 chr5 134167170 134226071 - ACLY chr17 41866917 41930542 - AC004922.1 chr7 99325879 99394653 + AC068580.4 chr11 1734821 1763954 - AL136454.1 chr1 192716132 192716653 + AD000671.2 chr19 35739252 35745432 - AGO4 chr1 35808016 35857890 + AC138969.1 chr16 16317444 16350590 + ACTB chr7 5527148 5563784 - AC007192.1 chr19 18153158 18178117 + ADAR chr1 154582057 154628013 - ACTG1 chr17 81509971 81523847 - AKT1 chr14 104769349 104795751 - AC010615.4 chr19 21405159 21491266 + AC018523.2 chr11 14493783 14520344 - AC004832.3 chr22 30409255 30428990 + ADSL chr22 40346500 40390463 + AKAP12 chr6 151239967 151358559 + AL022238.4 chr22 40346529 40410054 + ADRM1 chr20 62302093 62308862 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC012236.1 chr15 31221999 31230838 - AC087521.3 chr11 43921059 44001157 + AC091564.7 chr11 6610883 6616594 - AC091729.3 chr7 1160374 1165607 + AC245014.3 chr1 145281116 145281462 + AD000090.1 chr19 35557956 35581954 + AL031282.2 chr1 1702736 1737688 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA