exRNAdisease

Entry Detail

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General Information

Database ID: exR0388347 RNA Name: TMEM259 RNA Type: mRNA Chromosome: chr19 Starnd: - Coordinate: Start Site(bp): 1009648 End Site(bp): 1021179 External Links: ENSG00000182087

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AACS chr12 125065434 125143333 + ABCB9 chr12 122920951 122981649 - ABCF3 chr3 184186023 184194012 + ABR chr17 1003518 1229738 - AC010132.3 chr7 42909273 42932174 - AC010422.3 chr19 12643831 12648397 - AC097637.1 chr3 52221081 52231190 - ACBD6 chr1 180269653 180502954 - ACOT2 chr14 73567620 73575658 + ADAMTS1 chr21 26835755 26845409 - ADGRL1 chr19 14147743 14206187 - AF241726.2 chrX 37349330 38687674 + AGFG1 chr2 227472152 227561214 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC006252.1 chr3 52239258 52241097 + AC007952.4 chr17 19112000 19112636 - AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA