exRNAdisease

Entry Detail

---



General Information

Database ID: exR0388592 RNA Name: TPM4 RNA Type: mRNA Chromosome: chr19 Starnd: + Coordinate: Start Site(bp): 16067021 End Site(bp): 16103002 External Links: ENSG00000167460

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AAMDC chr11 77821109 77918432 + AAMP chr2 218264123 218270257 - AARSD1 chr17 42950526 42964498 - ABL1 chr9 130713016 130887675 + AC004922.1 chr7 99325879 99394653 + AC007192.1 chr19 18153158 18178117 + AC048338.1 chr12 122207779 122266423 - AC138696.1 chr8 143247110 143276403 + AC245033.1 chr15 82536788 82573194 - ACLY chr17 41866917 41930542 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ADCY5 chr3 123282296 123449758 - ADCY6 chr12 48766194 48789037 - ADIPOR2 chr12 1688574 1788674 + ADPGK chr15 72751369 72785846 - ADRM1 chr20 62302093 62308862 + AGAP3 chr7 151085831 151144436 + AHCY chr20 34280268 34311802 - AKT2 chr19 40230317 40285536 - AL136454.1 chr1 192716132 192716653 + AL365205.1 chr6 41780349 41790141 + ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-139-5p chr11 72615102 72615124 - hsa-miR-185-5p chr22 20033153 20033174 + hsa-miR-1270 chr19 20399320 20399342 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC008969.1 chr19 58002061 58011232 + AC016876.2 chr17 7581964 7584086 - AC026362.1 chr12 122975320 122982907 + AC026464.2 chr16 69463844 69466264 + AC079807.1 chr2 47905678 47907810 + AC099343.3 chr4 184471924 184472609 - AC132217.1 chr11 2129121 2129964 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA