exRNAdisease

Entry Detail

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General Information

Database ID: exR0388691 RNA Name: TRIM28 RNA Type: mRNA Chromosome: chr19 Starnd: + Coordinate: Start Site(bp): 58544064 End Site(bp): 58550722 External Links: ENSG00000130726

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABHD14A-ACY1 chr3 51974706 51989183 + AC005258.1 chr19 2269525 2341172 + AC007192.1 chr19 18153158 18178117 + AC008982.1 chr19 38817471 38840178 - AC010422.3 chr19 12643831 12648397 - AC092647.5 chr7 55887277 55955239 + AC118553.2 chr1 99970011 100083321 + AC129492.3 chr17 8150816 8162975 - AC138811.2 chr16 18788063 18801519 - AC245033.1 chr15 82536788 82573194 - ACBD6 chr1 180269653 180502954 - ACLY chr17 41866917 41930542 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ACTR1A chr10 102461881 102502712 - ACTR3C chr7 150243916 150323725 - ACY1 chr3 51983340 51989197 + ADAM10 chr15 58588809 58749791 - ADAR chr1 154582057 154628013 - ADD1 chr4 2843857 2930076 + ADSL chr22 40346500 40390463 + AHCY chr20 34280268 34311802 - AHDC1 chr1 27534035 27604431 - AIDA chr1 222668013 222713210 - AK2 chr1 33007940 33080996 - AKAP12 chr6 151239967 151358559 + AKR1A1 chr1 45550543 45570049 + AL121758.1 chr20 646626 675800 - AL136295.5 chr14 24147548 24166452 + ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-6807-5p chr19 58550285 58550306 + hsa-miR-6807-3p chr19 58550354 58550376 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC060780.1 chr17 43148368 43171037 - AC069281.2 chr7 100572232 100578700 - AC109460.3 chr16 28974804 28990775 + AD000090.1 chr19 35557956 35581954 + AL022311.1 chr22 37876148 37895563 + AL117378.1 chr6 131901963 131920565 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA