exRNAdisease

Entry Detail

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General Information

Database ID: exR0388852 RNA Name: TSPAN6 RNA Type: mRNA Chromosome: chrX Starnd: - Coordinate: Start Site(bp): 100627108 End Site(bp): 100639991 External Links: ENSG00000000003

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABL1 chr9 130713016 130887675 + AC010422.3 chr19 12643831 12648397 - AC011462.1 chr19 41350853 41425001 + AC118549.1 chr1 77562416 77683419 - AC120057.2 chr17 7240427 7244635 - ACTB chr7 5527148 5563784 - ACTN4 chr19 38647649 38731589 + ACVR1B chr12 51951699 51997078 + ADA2 chr22 17178790 17258235 - ADAMTS19 chr5 129460281 129738683 + AGBL5 chr2 27042364 27070622 + AKTIP chr16 53491040 53504411 - AL110118.2 chr14 93184973 93218586 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC010442.1 chr5 466124 473098 - AC068768.1 chr12 123262060 123262402 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA