exRNAdisease

Entry Detail

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General Information

Database ID: exR0389154 RNA Name: UGP2 RNA Type: mRNA Chromosome: chr2 Starnd: + Coordinate: Start Site(bp): 63840940 End Site(bp): 63891562 External Links: ENSG00000169764

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AASDH chr4 56338287 56387508 - ABCC10 chr6 43427366 43450427 + ABCE1 chr4 145098288 145129524 + AC004922.1 chr7 99325879 99394653 + AC093323.1 chr4 6663396 6676755 + AC118553.2 chr1 99970011 100083321 + ACIN1 chr14 23058564 23095614 - ADGRV1 chr5 90529344 91164437 + ADNP chr20 50888916 50931437 - ADO chr10 62804720 62808479 + AEN chr15 88621337 88632281 + AHCYL1 chr1 109984765 110023742 + AIF1L chr9 131096476 131123152 + AL022238.4 chr22 40346529 40410054 + ALDH1B1 chr9 38392702 38398661 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-302c-3p chr4 112648366 112648388 - hsa-miR-367-3p chr4 112647877 112647898 - hsa-miR-4709-5p chr14 74480175 74480196 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC124312.3 chr15 25087661 25088896 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA