exRNAdisease

Entry Detail

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General Information

Database ID: exR0389371 RNA Name: VIM RNA Type: mRNA Chromosome: chr10 Starnd: + Coordinate: Start Site(bp): 17228241 End Site(bp): 17237593 External Links: ENSG00000026025

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABHD6 chr3 58237532 58295693 + ABL1 chr9 130713016 130887675 + AC005258.1 chr19 2269525 2341172 + AC008763.3 chr19 7678501 7682854 + AC105052.3 chr7 102637049 102671641 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ACVR2B chr3 38453890 38493142 + ADAR chr1 154582057 154628013 - ADGRB1 chr8 142449430 142545009 + ADH5 chr4 99070978 99088801 - AHCY chr20 34280268 34311802 - AKIRIN1 chr1 38991276 39006059 + AKR7A2 chr1 19303965 19312146 - AL713999.1 chr1 155169409 155187272 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-367-3p chr4 112647877 112647898 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC126365.1 chr17 20788071 20789584 + AC135048.1 chr16 30948386 30956511 + AC139149.1 chr17 81514047 81527776 + AD000090.1 chr19 35557956 35581954 + AL035458.2 chr20 34234840 34281173 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA