exRNAdisease

Entry Detail

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General Information

Database ID: exR0389658 RNA Name: YBX3 RNA Type: mRNA Chromosome: chr12 Starnd: - Coordinate: Start Site(bp): 10699089 End Site(bp): 10723323 External Links: ENSG00000060138

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AAAS chr12 53307456 53324864 - ABHD10 chr3 111979010 111993368 + AC011462.1 chr19 41350853 41425001 + AC092329.3 chr19 23222755 23274221 - ACAP3 chr1 1292390 1309609 - ACAT2 chr6 159762045 159779112 + ACIN1 chr14 23058564 23095614 - ACTN4 chr19 38647649 38731589 + ADAM10 chr15 58588809 58749791 - AHCY chr20 34280268 34311802 - AHSA1 chr14 77457870 77469472 + AKAP8L chr19 15380050 15419141 - ALAD chr9 113386312 113401290 - ALDOA chr16 30064164 30070457 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004846.1 chr14 73242651 73245979 - AC092329.1 chr19 23257255 23274232 - AC092329.4 chr19 23259906 23274251 - AC106864.1 chr4 112693047 112706810 - AC132217.1 chr11 2129121 2129964 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA