Entry Detail


General Information

Database ID:exR0390452
RNA Name:AADAT
RNA Type:mRNA
Chromosome:chr4
Starnd:-
Coordinate:
Start Site(bp):170060222End Site(bp):170091699
External Links:ENSG00000109576



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ARL4C
chr2
234493041
234497081
-
B3GALNT2
chr1
235447190
235504452
-
CPD
chr17
30378927
30469989
+
EP400
chr12
131949942
132080460
+
FOXF2
chr6
1389576
1395603
+
FXR1
chr3
180868141
180982753
+
GNAS
chr20
58839718
58911192
+
HOXA1
chr7
27093313
27095996
-
LRP8
chr1
53242364
53328469
-
MACF1
chr1
39081316
39487177
+
NCSTN
chr1
160343316
160358952
+
NDUFB3
chr2
201071433
201085750
+
PGS1
chr17
78378649
78425114
+
PSMD3
chr17
39980807
39997959
+
RABL6
chr9
136807943
136841187
+
ZNF43
chr19
21804949
21852125
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-15a-5p
chr13
50049167
50049188
-
hsa-miR-15b-5p
chr3
160404607
160404628
+
hsa-miR-424-5p
chrX
134546680
134546701
-
hsa-miR-497-5p
chr17
7017979
7017999
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AL355987.4
chr9
136799223
136810042
+
XIST
chrX
73820649
73852723
-
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA