Entry Detail


General Information

Database ID:exR0390458
RNA Name:AAR2
RNA Type:mRNA
Chromosome:chr20
Starnd:+
Coordinate:
Start Site(bp):36236459End Site(bp):36270918
External Links:ENSG00000131043



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
MCM3AP
chr21
46235133
46286297
-
PLCB2
chr15
40278176
40307935
-
MANBAL
chr20
37289638
37317260
+
LDHA
chr11
18394560
18408425
+
DHX15
chr4
24517441
24584554
-
YWHAH
chr22
31944522
31957603
+
M6PR
chr12
8940361
8949761
-
LSS
chr21
46188141
46228824
-
MTHFR
chr1
11785723
11806455
-
EGLN2
chr19
40798996
40808434
+
COX6B1
chr19
35648323
35658782
+
PKP2
chr12
32790745
32896840
-
TEN1-CDK3
chr17
75979231
76005999
+
TMEM47
chrX
34627075
34657285
-
HMOX2
chr16
4474690
4510347
+
BRF1
chr14
105209286
105315589
-
CCDC77
chr12
389273
442642
+
DDX17
chr22
38483438
38507660
-
NELFE
chr6
31952087
31959038
-
PAGR1
chr16
29816152
29822489
+
LMTK2
chr7
98106862
98209638
+
RAB4B-EGLN2
chr19
40778242
40808418
+
HNRNPH3
chr10
68331174
68343191
+
ACTR1A
chr10
102461881
102502712
-
CANX
chr5
179678628
179731641
+
MCM7
chr7
100092728
100101940
-
RPL3
chr22
39312882
39320389
-
FLII
chr17
18244815
18258738
-
TUBA1A
chr12
49184795
49189080
-
PAICS
chr4
56435741
56464579
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-103a-3p
chr5
168560904
168560926
-
hsa-miR-147a
chr9
120244985
120245004
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
EBLN3P
chr9
37079645
37090928
+
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA