Entry Detail


General Information

Database ID:exR0390459
RNA Name:AARS2
RNA Type:mRNA
Chromosome:chr6
Starnd:-
Coordinate:
Start Site(bp):44298731End Site(bp):44313347
External Links:ENSG00000124608



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
COX5A
chr15
74919791
74938083
-
HSP90AB1
chr6
44246166
44253888
+
DENND5A
chr11
9138825
9265350
-
SFT2D3
chr2
127701497
127705242
+
USP22
chr17
20999596
21043760
-
SRSF5
chr14
69726900
69772005
+
FAM83D
chr20
38926312
38953106
+
RRP12
chr10
97356358
97426076
-
WDR27
chr6
169457212
169702067
-
KPNB1
chr17
47649476
47685505
+
RAD23A
chr19
12945855
12953642
+
RBM8A
chr1
145917714
145927678
-
TIMELESS
chr12
56416363
56449426
-
MIDN
chr19
1248553
1259140
+
MT-ND2
chrMT
4470
5511
+
GRAMD1A
chr19
34994784
35026471
+
TM9SF3
chr10
96518110
96587452
-
TP53I11
chr11
44885903
44951306
-
HSP90B1
chr12
103930107
103953645
+
NDFIP1
chr5
142108779
142154440
+
USP35
chr11
78188812
78215232
+
RPL13
chr16
89560657
89566828
+
EIF3C
chr16
28688558
28735730
+
DPPA4
chr3
109326141
109337572
-
ARSA
chr22
50622754
50628173
-
TBL1XR1
chr3
177019340
177228000
-
WDR74
chr11
62832342
62841809
-
ORAI3
chr16
30949068
30956461
+
PTOV1
chr19
49850735
49860744
+
PML
chr15
73994673
74047827
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC102953.2
chr7
1464497
1467522
-
AL355075.4
chr14
20343048
20343685
-
EBLN3P
chr9
37079645
37090928
+
XIST
chrX
73820649
73852723
-
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA