Entry Detail


General Information

Database ID:exR0390464
RNA Name:AATF
RNA Type:mRNA
Chromosome:chr17
Starnd:+
Coordinate:
Start Site(bp):36948954End Site(bp):37056871
External Links:ENSG00000275700



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
SSR1
chr6
7268306
7347446
-
RPS19
chr19
41860255
41872925
+
THY1
chr11
119417378
119424985
-
EIF3B
chr7
2354086
2380745
+
CD74
chr5
150400041
150412929
-
CASP2
chr7
143288215
143307696
+
BDH1
chr3
197509783
197573323
-
RNF113A
chrX
119870475
119871733
-
RTCA
chr1
100266207
100292769
+
AP002990.1
chr11
62559603
62591531
-
CKB
chr14
103519667
103522833
-
CLDN23
chr8
8701937
8704096
+
RPL8
chr8
144789765
144792587
-
VLDLR
chr9
2621787
2660056
+
ACTB
chr7
5527148
5563784
-
MT-CO3
chrMT
9207
9990
+
RPS6
chr9
19375715
19380236
-
NIPA2
chr15
22838641
22868384
+
UBA52
chr19
18571730
18577550
+
DYNC1H1
chr14
101964573
102056443
+
UBALD2
chr17
76265348
76271298
+
LSM1
chr8
38163335
38176730
-
CIC
chr19
42268537
42295797
+
PAQR3
chr4
78887127
78939438
-
CCNA2
chr4
121816444
121823933
-
TMEM258
chr11
61768501
61792802
-
ACTR1B
chr2
97655939
97664044
-
CIT
chr12
119685791
119877320
-
FAN1
chr15
30890559
30943108
+
SRGN
chr10
69088103
69104805
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-4492
chr11
118910765
118910781
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AL355987.4
chr9
136799223
136810042
+
NAALADL2-AS2
chr3
175234861
175271096
-
SNHG1
chr11
62851984
62855953
-
XIST
chrX
73820649
73852723
-
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA