Entry Detail


General Information

Database ID:exR0390466
RNA Name:ABAT
RNA Type:mRNA
Chromosome:chr16
Starnd:+
Coordinate:
Start Site(bp):8674596End Site(bp):8784575
External Links:ENSG00000183044



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ARFIP2
chr11
6474683
6481479
-
BTNL9
chr5
181040225
181061521
+
ESRP1
chr8
94641074
94707466
+
HNRNPA1P48
chr16
51553436
51647132
+
LSM14B
chr20
62122461
62135374
+
MEA1
chr6
43011143
43016868
-
PTCD2
chr5
72320367
72368395
+
RHBDF2
chr17
76470891
76501790
-
RPS28
chr19
8321158
8323340
+
RPS6
chr9
19375715
19380236
-
SENP6
chr6
75601509
75718281
+
SNRPD2
chr19
45687454
45692569
-
SP2
chr17
47896150
47928957
+
SPTLC1
chr9
92000087
92115413
-
TMEM9
chr1
201134772
201171574
-
USP7
chr16
8892097
8975328
-
ZBTB11
chr3
101648889
101677132
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-485-5p
chr14
101055427
101055448
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
ALDH1L1-AS2
chr3
126180012
126210169
+
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA