Entry Detail


General Information

Database ID:exR0390488
RNA Name:ABCC10
RNA Type:mRNA
Chromosome:chr6
Starnd:+
Coordinate:
Start Site(bp):43427366End Site(bp):43450427
External Links:ENSG00000124574



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
GTPBP1
chr22
38705742
38738299
+
PUM1
chr1
30931506
31065991
-
ELMSAN1
chr14
73715122
73790285
-
ZNF462
chr9
106863166
107013634
+
RPL13
chr16
89560657
89566828
+
DIP2A
chr21
46458891
46570015
+
YWHAG
chr7
76326799
76358991
-
DNMT1
chr19
10133345
10231286
-
ERCC2
chr19
45349837
45370918
-
EGFL7
chr9
136658856
136672678
+
MAP3K11
chr11
65597756
65615382
-
RPL18A
chr19
17859910
17864153
+
CLEC2D
chr12
9664969
9699553
+
SPATA20
chr17
50543058
50555852
+
SLC12A9
chr7
100826820
100867010
+
DYRK2
chr12
67648338
67665406
+
SF3A2
chr19
2236824
2248655
+
NCOA6
chr20
34689097
34825651
-
PLCG1
chr20
41136960
41196801
+
FBN2
chr5
128257909
128659185
-
MCCC2
chr5
71587288
71658706
+
AP5B1
chr11
65773898
65780976
-
UBAC1
chr9
135932969
135961373
-
MMADHC
chr2
149569637
149587778
-
PKMYT1
chr16
2968024
2980479
-
UGP2
chr2
63840940
63891562
+
FAM3A
chrX
154506159
154516242
-
NOTCH2
chr1
119911553
120100779
-
IMP3
chr15
75639085
75648706
-
PHGDH
chr1
119648411
119744226
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-6780b-3p
chr6
43434600
43434620
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC007952.4
chr17
19112000
19112636
-
AC092139.1
chr16
81385463
81387560
+
AP001266.1
chr11
65795946
65797219
-
LINC01248
chr2
5602505
5691488
-
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA