Entry Detail


General Information

Database ID:exR0390503
RNA Name:ABCF1
RNA Type:mRNA
Chromosome:chr6
Starnd:+
Coordinate:
Start Site(bp):30571393End Site(bp):30597179
External Links:ENSG00000204574



Disease Information

Disease Name:Gastric Cancer
Disease Category:Cancers
MeSH ID:D013274
Type:Neoplasms/Digestive System Neoplasms
Alias:Stomach Neoplasms//Neoplasm, Stomach//Stomach Neoplasm//Neoplasms, Stomach//Gastric Neoplasms//Gastric Neoplasm//Neoplasm, Gastric//Neoplasms, Gastric//Cancer of Stomach//Stomach Cancers//Gastric Cancer//Cancer, Gastric//Cancers, Gastric//Gastric Cancers//Stomach Cancer//Cancer, Stomach//Cancers, Stomach//Cancer of the Stomach//Gastric Cancer, Familial Diffuse



Expression Detail

GEO ID:GSE64951
Description:Discovered salivary transcriptomic biomarkers for the detection of gastric cancer
Experimental Design:Cancer vs Control
Case Disease Type:Gastric Cancer
Case Disease SubType:NA
Case Sample:Gastric Cancer
Control Sample:Normal
Number of Case:63
Number of Control:31
Number of Samples:94





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
HLA-DRB1
chr6
32578769
32589848
-
ZNF501
chr3
44729596
44737083
+
TMEM250
chr9
136114581
136118875
-
MT-CO1
chrMT
5904
7445
+
GLUL
chr1
182381704
182392206
-
CIC
chr19
42268537
42295797
+
MTRNR2L8
chr11
10507894
10509186
-
MYLIP
chr6
16129086
16148248
+
IFIT3
chr10
89327997
89340971
+
ZNF581
chr19
55635459
55645623
+
MAU2
chr19
19320829
19358754
+
CERS2
chr1
150960583
150975004
-
TNRC6A
chr16
24610209
24827632
+
PDP2
chr16
66878589
66895754
+
BSG
chr19
571277
583493
+
EEF1G
chr11
62559596
62574086
-
PTBP1
chr19
797075
812327
+
AP1S2
chrX
15825806
15854931
-
FTL
chr19
48965309
48966879
+
IQGAP1
chr15
90388242
90502239
+
SURF4
chr9
133361450
133376166
-
SELENON
chr1
25800176
25818221
+
RPS6
chr9
19375715
19380236
-
PDCD6IP
chr3
33798571
33869707
+
GPC6
chr13
93226807
94408020
+
VPS26A
chr10
69123512
69174412
+
CYFIP2
chr5
157266079
157395595
+
MFSD5
chr12
53251251
53254405
+
AC005832.4
chr12
4604944
4662643
+
BZW2
chr7
16646131
16706523
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-302c-3p
chr4
112648366
112648388
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC000068.1
chr22
19447893
19450105
+
AC010642.2
chr19
58309727
58327248
-
DANCR
chr4
52712404
52720351
+
Display:



Experiment Detail

GEO ID:GSE64951
Sample Source:Saliva
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:Saliva was spun down to collect cell-free saliva supernatant.
RNA Extract protocol:Total RNA was extracted by using Qiagen Rneasy kit.
RNA library preparation protocol:Standard Affymetrix protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA